CSE 6250 Big Data for Healthcare

Learning Environment

This section will show you how to setup environment. Setting up Hadoop, Spark, Java, etc. for a learning can be time consuming and tedious. In order to simplify this, we provide several different approaches.

Setup Virtual Environment

We provide two simple approaches for environment setup, the 1st one is preferred.

  1. Docker in Local OS
  2. Docker in Azure (Alternative)

Get Training Material

You can find a copy from /bigdata-bootcamp in the docker.

You can also download sample code, data etc. to your host machine from our bitbucket repository by issuing below command in a Terminal

git clone https://bitbucket.org/realsunlab/bigdata-bootcamp.git

Please refer to this link for more detail.

Other Steps

Since everything are integrated into the docker image, nothing else is required to do for the base environment. However, if you wish to do something else in your host machine. The following tips may help.

Using Terminal

In this training, we reply heavily on terminal.

  • For Linux users, you are probably familiar with the terminal.
  • For Mac users, you could search for the terminal application if you have never use that before.
  • For Windows users, please install git and use the Git Bash application that comes with Git for Windows.

If you wish, you can also just using git in docker, which was already installed.

Install Git

In order to get the latest sample source code, scripts for environment setup, you will need to install Git, a version control software.

Install Git in Windows

  1. Install Git: https://git-scm.com/download/win . Please make sure you are installing this Git for Windows, instead of Github for Windows because you will rely heavily on Git Bash terminal. Make sure to install with Checkout as-is, commit as-is, otherwise you will run into errors for vagrant. If you have already installed git but wish to set autocrlf to false, type: git config --global core.autocrlf false, and then re-clone the git repository.
  2. Open Git Bash
  3. Decide where you want the sample code to live, I put mine in my home directory
  4. Type: git clone https://bitbucket.org/realsunlab/bigdata-bootcamp.git

Install Git in Mac

With Yosemite and higher, your OS comes preinstalled with git, so you do not need this step. Otherwise, we highly recommend you install Git through Homebrew. To do so, please

  1. Open Terminal
  2. Run ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
  3. Run brew install git

Install Git in Linux

Follow instructions in Download for Linux and Unix.

Docker in Local OS →